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Graduate research methods

Research Methods Lab

How to plan, analyze and write graduate-level research. Learn the terms, pick the right design and test, check for significance, work through z-tests, t-tests and regression step by step, and use 3D models and live distribution tables. Each module ends with a short test, and the last module shows how to get your work published.

For learning only. All example data on this page are made up to teach the steps. Before you run a real study, check your plan with your advisor, your program's methods faculty and your Institutional Review Board (IRB).

Research starts with a clear question and precise terms. The same words (variable, validity, significance) come up in every course, proposal and defense. Search the glossary or filter it by topic. Each term has a plain definition and a student-life example.

Glossary of research terms

Levels of measurement decide your options

LevelWhat it meansExampleTypical statistics
NominalCategories with no orderMajor, first-generation statusCounts, percentages, mode, chi-square
OrdinalOrdered categories, unequal gapsClass rank; “never / sometimes / often”Median, percentiles, Mann–Whitney, Spearman
IntervalEqual gaps, no true zeroTemperature in °F; many scale scoresMean, SD, t-tests, ANOVA, correlation
RatioEqual gaps and a true zeroHours of sleep, reaction timeAll of the above, plus ratios (“twice as long”)

A design is the plan for collecting data so that it can answer your question. Quantitative designs measure and count to test hypotheses. Qualitative designs study meaning, experience and process in depth. Mixed methods designs combine both on purpose. The right design follows from the question, not the other way around.

Designs, and why each one works

Match the question to the design

If your question starts with…Consider
“Does X cause Y?”True experiment; quasi-experiment if you can't randomize
“Is X related to Y?” / “Does X predict Y?”Correlational or survey design; regression
“How much / how many / how common?”Descriptive survey with a probability sample
“What is it like to…?”Phenomenology
“How does this process unfold?”Grounded theory
“How does this group make meaning?”Ethnography
“Why did the numbers come out this way?”Explanatory sequential mixed methods

Three things decide the test: the type of outcome (continuous, yes/no, or categories), your goal (compare groups or relate variables), and the structure of the data (how many groups, and whether the same people are measured more than once). Answer the questions below to get a recommendation.

Test chooser

Reference table

TestUse it whenExampleKey assumptionsAPA-style report

APA examples in rows 1–4 and 9 come from the worked examples on this page. Other rows show the reporting format only.

A test of significance asks: if there were truly no effect (H₀), how surprising would data like mine be? The p-value is that probability. If p is at or below your chosen α (usually .05), you reject H₀. A small p-value does not tell you the effect is large or important, so you also report an effect size and a confidence interval.

Six steps to check for significance

    Type I and Type II errors

    H₀ is actually true
    H₀ is actually false
    You reject H₀
    Type I error (α)
    A false alarm: you claim an effect that isn't there.
    Correct (power = 1 − β)
    You detect a real effect.
    You fail to reject H₀
    Correct
    No effect, and you don't claim one.
    Type II error (β)
    A miss: a real effect goes undetected.

    Power explorer

    Two groups, two-tailed test (normal approximation). The grey curve is where the test statistic falls if H₀ is true; the teal curve is where it falls if the true effect is d. Power is the teal area past the critical line.

    H₀ distributionα (Type I error)β (Type II error)Power

    Effect sizes: how big is it?

    MeasureSmallMediumLarge
    Cohen's d (two means)0.200.500.80
    Pearson r.10.30.50
    η² (ANOVA).01.06.14
    Cohen's f²(regression).02.15.35

    Benchmarks from Cohen (1988). They are rough guides; judge size against prior studies in your field (Lakens, 2013).

    Confidence intervals

    A 95% confidence interval gives a range of plausible values for the population effect: estimate ± critical value × SE.

    If a 95% CI for a mean difference excludes 0, the two-tailed test at α = .05 is significant. The width shows precision: narrow intervals come from large samples and low variability.

    Example: In the z-test example below, 22.1 ± 1.96 × 1.00 gives a 95% CI of [20.14, 24.06]. The value 20 lies outside it, which agrees with p = .036.

    What p-values do and don't mean (ASA statement)

      Principles from Wasserstein and Lazar (2016). See also Greenland et al. (2016) on common misinterpretations.

      Use a z-test when…

      • You know the population standard deviation (σ) from a large prior source, such as national norms.
      • The population is normal, or the sample is large enough (n ≥ 30) for the Central Limit Theorem.
      • You are testing proportions with a large sample (one- or two-proportion z-test).
      z = (x̄ − μ₀) / (σ / √n)

      Use a t-test when…

      • σ is unknown and you estimate it with the sample SD (s). This is almost always the case in real studies.
      • Data are roughly normal, especially with small samples. With larger n, t is robust to moderate skew.
      • Pick the version by structure: one-sample, independent samples (two separate groups) or paired (same people twice, or matched pairs).
      t = (x̄ − μ₀) / (s / √n),  df = n − 1

      Why t has fatter tails

      Estimating σ with s adds uncertainty, so the t-distribution spreads more weight into the tails. As df grows, t gets closer to the normal (z) curve. That is why t critical values are larger than 1.96 for small samples.

      Normal (z)t with chosen df

      Four worked examples, step by step

      Correlation (r)

      Measures how strongly two continuous variables move together, from −1 to +1. Use it when you only want to describe the association. It does not show cause, and it only captures straight-line relationships.

      Simple linear regression

      Fits the line ŷ = a + bx to predict an outcome from one predictor. The slope b is the expected change in y for each one-unit change in x. Use it when you want to predict, or to express the relationship in the outcome's units.

      Multiple regression

      ŷ = a + b₁x₁ + b₂x₂ + … Each slope is the effect of one predictor while holding the others constant. Use it to control for confounds and to compare predictors. Watch for multicollinearity (predictors that overlap heavily).

      Logistic regression

      Used when the outcome is yes/no (retained or not, passed or not). It models the log-odds of the outcome; results are reported as odds ratios. Linear regression would predict impossible probabilities below 0 or above 1.

      Why linear regression works, and when it doesn't: check LINE

      L

      Linearity

      The relationship is a straight line. Check a scatterplot and a residuals-vs-fitted plot.

      I

      Independence

      Each observation is separate. Repeated measures or students nested in classes break this; use multilevel models.

      N

      Normal residuals

      Residuals are roughly normal. Check a histogram or Q–Q plot. Matters most with small samples.

      E

      Equal variance

      Residual spread is similar at every level of x (homoscedasticity). A funnel shape signals a problem.

      Ordinary least squares chooses the line that makes the sum of squared residuals as small as possible. When LINE holds, the slope's standard error, t-test and confidence interval are trustworthy.

      Worked example: do study hours predict exam scores?

      hours (x): 2, 4, 5, 6, 8, 9, 10, 12, 13, 15
      score (y): 60, 70, 64, 72, 69, 80, 74, 85, 78, 88
      1. Means
        x̄ = 8.4, ȳ = 74.0
      2. Sums of products and squares
        Sxy = Σ(x − x̄)(y − ȳ) = 302.0
        Sxx = Σ(x − x̄)² = 158.4
      3. Slope and intercept
        b = Sxy / Sxx = 302 / 158.4 = 1.907
        a = ȳ − b·x̄ = 74 − 1.907(8.4) = 57.98
      4. Fit
        r = .90, R² = .81 (81% of the variance in scores is explained by hours)
      5. Test the slope (H₀: β = 0)
        SE_b = 0.325, t = b / SE_b = 5.86, df = n − 2 = 8
        critical t(.05, two-tailed) = 2.306 → p < .001
      6. Predict
        ŷ(7 hours) = 57.98 + 1.907(7) = 71.3
      Conclusion. Study hours significantly predicted exam scores. Each extra hour was linked to about 1.9 more points.
      b = 1.91, t(8) = 5.86, p < .001, R² = .81

      3D model: multiple regression plane

      With two predictors, the regression “line” becomes a plane. Each dot is a simulated student. Set the true effects, then watch least squares fit the plane. Vertical lines are residuals. Drag the model to rotate it.

      Drag to rotate

      3D model: the t-distribution family

      Each ribbon is a t-distribution with a different df, from 1 (front) to 30 (back). The dashed curve at the far back is the normal (z) curve. The highlighted curve shows your df, with the rejection region in red.

      Drag to rotate

      p-value and critical-value calculator

      p-value areaCritical value(s)Your statistic

      Standard normal (z) table

      Each cell is the area to the left of z, Φ(z). Row gives z to one decimal; column adds the second decimal. For negative z use Φ(−z) = 1 − Φ(z). Click a cell to send it to the calculator.

      t critical-value table

      Each cell is the value of t that cuts off α in the upper tail. For a two-tailed test, use the column whose two-tailed α matches, and compare |t|. Click a cell to send it to the calculator.

      How to use the tables, step by step

      Finding a p-value from z = 2.10

      1. Go to row 2.1 and column .00: Φ(2.10) = .9821.
      2. Upper-tail area: 1 − .9821 = .0179.
      3. Two-tailed: double it, p = .0357.
      4. Compare with α = .05: p < α, so reject H₀.

      Finding a critical t for df = 18

      1. Two-tailed α = .05 puts .025 in each tail.
      2. Go to row df = 18 and the column “one-tail .025 / two-tail .05”: 2.101.
      3. Reject H₀ if |t| ≥ 2.101. Our t = −4.12, so reject.
      4. If your df isn't listed, use the next smaller df (a slightly stricter cutoff).

      Thesis (usually master's)

      Shows you can carry out a focused study and apply existing methods. Often 40–100 pages; may replicate or extend prior work. Your program sets the exact format.

      Dissertation (doctoral)

      Makes an original contribution to knowledge. Usually longer, with a proposal defense, a committee and a final oral defense. Some programs allow a three-article format.

      Twelve steps from topic to defense

        The five-chapter model

        ChapterWhat goes in it

        Ethics: the Belmont principles and the IRB

        Respect for persons

        Informed, voluntary consent. Extra protections for people with reduced autonomy.

        Beneficence

        Do no harm, and maximize benefits while minimizing risks.

        Justice

        Share the burdens and benefits of research fairly; don't select people just because they are easy to reach.

        In the United States, research with human participants is governed by the Common Rule (45 CFR 46). You must get IRB approval before recruiting anyone or collecting data, including pilot data and surveys of classmates.

        Reporting results in APA style (7th ed.)

        AnalysisHow to write it
        Independent t-testWorkshop participants reported lower stress (M = 18.5, SD = 2.17) than the control group (M = 22.5, SD = 2.17), t(18) = −4.12, p < .001, d = −1.84.
        Paired t-testAnxiety dropped from pretest to posttest, t(7) = 5.29, p = .001, dz = 1.87.
        RegressionStudy hours predicted exam scores, b = 1.91, t(8) = 5.86, p < .001, R² = .81.
        General rulesItalicize statistical symbols. Report exact p-values to two or three decimals (use p < .001 for smaller). Drop the leading zero for values that can't exceed 1 (p, r, R²). Always include an effect size. Follow APA JARS for what to report in each section.
        Source for this module. The twelve-week plan below follows the structure of Wendy Laura Belcher's Writing Your Journal Article in Twelve Weeks: A Guide to Academic Publishing Success (2nd ed., University of Chicago Press, 2019).
        Week titles are quoted from the publisher's table of contents. The goals and tasks are short summaries written by Doc Lobe for teaching; they are not text from the book. © 2019 Wendy Laura Belcher. All rights reserved to the author and to the University of Chicago Press. The free workbook forms linked below are © Wendy Laura Belcher, all rights reserved, and are linked from her website rather than copied here. For the full method, examples and exercises, use the book: buy it from the University of Chicago Press or borrow it from your library.

        Most first articles start as something you have already written: a seminar paper, a thesis or dissertation chapter, or a conference talk. Belcher's approach treats publishing as revising that draft on a steady schedule, a little each day, rather than waiting for a perfect idea. The plan runs twelve weeks, with extra chapters for starting from nothing (Week 0) and for handling the journal's decision (Week X).

        The twelve-week plan

        Tick off each week as you finish it. Your progress is saved only in this browser.

          From thesis chapter to journal article

          Thesis or dissertationJournal articleWhat changes
          Chapter 1: Introduction (15–30 pages)Introduction (2–4 pages)Open with the problem and your argument. Cut background the journal's readers already know.
          Chapter 2: Literature review (30–60 pages)Focused review within the introduction or a short sectionKeep only the studies that set up your question and the gap you fill. Cite recent work from the target journal.
          Chapter 3: MethodologyMethodBe concise but complete enough to replicate. Follow APA JARS for your design.
          Chapter 4: Results (all research questions)Results (often one or two questions)One dissertation can become several articles, each built around one clear finding.
          Chapter 5: DiscussionDiscussion and conclusionLead with what the finding means for the field. Keep limitations honest and brief.

          Page ranges are typical, not rules. Always check the target journal's word limit and author guidelines. Many programs require you to acknowledge that an article was adapted from your thesis.

          Is this journal trustworthy? A quick check

          Predatory journals charge fees without real peer review or editing. Answer these questions about a journal you are considering. The checklist is adapted from Think. Check. Submit.; also look the journal up in DOAJ if it is open access.

          What happens after you submit

          1. SubmitManuscript, cover letter, ORCID iD and required statements, uploaded through the journal's system.
          2. Editor's screenThe editor checks scope, fit and basic quality. A desk rejection can happen here, often within days or weeks.
          3. Peer reviewUsually at least two independent reviewers. This often takes one to three months or more.
          4. DecisionAccept (rare the first time), minor revisions, major revisions (revise and resubmit) or reject.
          5. Revise and respondMake the changes and write a point-by-point response letter. It may go back to the reviewers.
          6. Accept, proofs, publishSign the author agreement, check the proofs carefully, and your article gets a DOI.

          Rejection is common, even for experienced scholars. Use the reviews to improve the paper and send it to the next journal on your list.

          What goes in a cover letter

          • Addressed to the editor by name, about one page
          • The manuscript title and article type
          • A few sentences on what you found and why it fits this journal's readers
          • A statement that the work is original and not under review elsewhere
          • Conflict-of-interest and ethics (IRB) statements, if the journal asks for them here
          • Your contact details

          Writing the response to reviewers

          • Thank the editor and reviewers, briefly
          • Copy each comment, then answer it directly below
          • Say exactly what you changed and where (page and line)
          • If you disagree, explain why politely and with evidence
          • Make the reviewers' job easy; don't make them hunt for changes

          Based on Noble (2017), Ten simple rules for writing a response to reviewers.

          Example: one row of a response letter

          Reviewer commentResponseChange made
          R2.3: The sample of 20 students seems small for the conclusions drawn.Thank you. We agree the sample limits generalization. We now report the effect size with its 95% confidence interval and have softened the claims in the Discussion.Results, p. 12, lines 240–246; Discussion, p. 16, lines 330–338; new limitation added on p. 18.

          A made-up example for teaching.

          Authorship, identity and your rights

          Who counts as an author

          Under ICMJE guidelines, each author must make a substantial contribution, draft or critically revise the work, approve the final version, and agree to be accountable for it. Agree on author order early, especially with your advisor.

          Credit every role

          The CRediT taxonomy names 14 contributor roles, such as conceptualization, formal analysis and writing (review and editing). Many journals ask you to list them.

          Get an ORCID iD

          A free, permanent ID that links you to all your publications, even if your name or school changes. Many journals require one at submission.

          Know your rights

          Read the copyright or license agreement before signing. The SPARC Author Addendum can help you keep rights such as posting your accepted manuscript. Check a journal's preprint and sharing policy in Jisc Open Policy Finder.

          Sources

          References